UCSF AI Publications
SiamQuality: a ConvNet-based foundation model for photoplethysmography signals
Physiological Measurement,
Randall J Lee, and 5 more from outside UCSF
Related to: Cardiovascular, Bioengineering, Networking and Information Technology R&D (NITRD)
SiamQuality: a ConvNet-based foundation model for photoplethysmography signals
Physiological Measurement,
Randall J Lee, and 5 more from outside UCSF
Related to: Cardiovascular, Bioengineering, Networking and Information Technology R&D (NITRD)
ZMPY3D: accelerating protein structure volume analysis through vectorized 3D Zernike moments and Python-based GPU integration
Bioinformatics Advances,
Jhih-Siang Lai, Stephen K Burley, Jose M Duarte
Altmetric score: 2Related to: Bioengineering, Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence, Data Science
Understanding natural language: Potential application of large language models to ophthalmology
Asia-Pacific Journal of Ophthalmology,
Ying Han, and 13 more from outside UCSF
Cited 1 timesRelated to: Clinical Research, Bioengineering, Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Patient Safety
Birth defects among offspring of California firefighters, 2007–2019
Preventive Medicine,
Rebecca J Baer, and 6 more from outside UCSF
Altmetric score: 1Related to: Congenital Structural Anomalies, Pediatric
International survey on invasive lobular breast cancer identifies priority research questions
npj Breast Cancer,
Rita Mukhtar, and 22 more from outside UCSF
Altmetric score: 2Related to: Clinical Trials and Supportive Activities, Cancer, Breast Cancer, Health Disparities, Clinical Research, Women's Health
International survey on invasive lobular breast cancer identifies priority research questions
npj Breast Cancer,
Rita Mukhtar, and 22 more from outside UCSF
Altmetric score: 2Related to: Women's Health, Clinical Research, Breast Cancer, Cancer, Clinical Trials and Supportive Activities, Health Disparities
International survey on invasive lobular breast cancer identifies priority research questions
npj Breast Cancer,
Rita Mukhtar, and 22 more from outside UCSF
Altmetric score: 2Related to: Health Disparities, Cancer, Women's Health, Clinical Research, Breast Cancer, Clinical Trials and Supportive Activities
Prediction of future visceral adiposity and application to cancer research: The Multiethnic Cohort Study
PLOS ONE,
Iona Cheng, and 12 more from outside UCSF
Related to: Cancer, Aging, Prevention, Women's Health, Breast Cancer, Digestive Diseases, Colo-Rectal Cancer, Obesity
The Ethics of Relational AI — Expanding and Implementing the Belmont Principles
New England Journal of Medicine,
Ida Sim, Christine Cassel
Altmetric score: 35
Cited 2 timesRelated to: Machine Learning and Artificial Intelligence
An integrative approach to protein sequence design through multiobjective optimization
PLOS Computational Biology,
Lu Hong, Tanja Kortemme
Cited 1 timesRelated to: Networking and Information Technology R&D (NITRD)
An integrative approach to protein sequence design through multiobjective optimization
PLOS Computational Biology,
Lu Hong, Tanja Kortemme
Related to: Networking and Information Technology R&D (NITRD)
An integrative approach to protein sequence design through multiobjective optimization.
PLOS Computational Biology,
Lu Hong, Tanja Kortemme
Related to: Networking and Information Technology R&D (NITRD)
Comparing GPT-4 and Human Researchers in Health Care Data Analysis: Qualitative Description Study
Journal of Medical Internet Research,
Kevin Danis Li [first], Adrian M Fernandez, Rachel Schwartz, Natalie Rios, Marvin Nathaniel Carlisle, Hiren V Patel, Benjamin N Breyer [last], and 1 more from outside UCSF
Altmetric score: 5Related to: Clinical Research, Mental Health, Behavioral and Social Science
Where Is the Content Expertise in the Clinician Educator Milestones?
Academic Medicine,
John C Penner
Common definitions and variables are needed for the United States to join the conversation on acute-on-chronic liver failure
American Journal of Transplantation,
Jin Ge [first], and 2 more from outside UCSF
Related to: Digestive Diseases, Chronic Liver Disease and Cirrhosis, Liver Disease, Transplantation
Harnessing EHR data for health research
Nature Medicine,
Alice S. Tang [first], Sarah R. Woldemariam, Silvia Miramontes, Tomiko T. Oskotsky, Marina Sirota [last], and 1 more from outside UCSF
Altmetric score: 15Related to: Precision Medicine, Machine Learning and Artificial Intelligence, Patient Safety, Data Science, Clinical Research, Networking and Information Technology R&D (NITRD)
Large Language Models Can Enable Inductive Thematic Analysis of a Social Media Corpus in a Single Prompt: Human Validation Study
JMIR Infodemiology,
Michael S Deiner [first], Vlad Honcharov, Travis C Porco, Urmimala Sarkar [last], and 2 more from outside UCSF
Altmetric score: 2Novel Methodology for Linking 9-1-1 Dispatch Categories with a Death Registry: Mortality Rates of Selected Dispatch Categories
Prehospital Emergency Care,
Karl A. Sporer [first], Mary P. Mercer [last], and 3 more from outside UCSF
Altmetric score: 2Related to: Clinical Research
Artificial intelligence chatbot vs pathology faculty and residents: Real-world clinical questions from a genitourinary treatment planning conference
American Journal of Clinical Pathology,
Deepika Sirohi, and 7 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence
Artificial intelligence chatbot vs pathology faculty and residents: Real-world clinical questions from a genitourinary treatment planning conference
American Journal of Clinical Pathology,
Deepika Sirohi, and 7 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence
Gender bias in images of anaesthesiologists generated by artificial intelligence
British Journal of Anaesthesia,
Odmara L Barreto Chang, and 9 more from outside UCSF
Altmetric score: 8Transforming Cardiovascular Care With Artificial Intelligence: From Discovery to Practice JACC State-of-the-Art Review
Journal of the American College of Cardiology,
Atul J Butte, and 6 more from outside UCSF
Altmetric score: 61
Cited 7 timesRelated to: Cardiovascular, Networking and Information Technology R&D (NITRD), Clinical Research, Bioengineering, Machine Learning and Artificial Intelligence
Identifying and Measuring Administrative Harms Experienced by Hospitalists and Administrative Leaders
JAMA Internal Medicine,
Andrew Auerbach, Kirsten N. Kangelaris, Matthew Sakumoto, and 10 more from outside UCSF
Altmetric score: 59
Cited 1 timesRelated to: Clinical Research
A comparative study of large language model-based zero-shot inference and task-specific supervised classification of breast cancer pathology reports
Journal of the American Medical Informatics Association,
Madhumita Sushil [first], Travis Zack, Divneet Mandair, Dmytro Lituiev, Atul J Butte [last], and 4 more from outside UCSF
Cited 1 timesRelated to: Networking and Information Technology R&D (NITRD), Bioengineering, Cancer, Breast Cancer, Women's Health
Standardizing imaging findings representation: harnessing Common Data Elements semantics and Fast Healthcare Interoperability Resources structures
Journal of the American Medical Informatics Association,
Marc D Kohli, and 5 more from outside UCSF
Cited 1 timesRelated to: Networking and Information Technology R&D (NITRD), Biomedical Imaging
Large-scale neurophysiology and single-cell profiling in human neuroscience
Nature,
Anthony T. Lee, Edward F. Chang, Mercedes F. Paredes, Tomasz J. Nowakowski
Altmetric score: 26
Cited 1 timesRelated to: Mental Health, Genetics, Neurosciences, Clinical Research, Human Genome
Structuring medication signeturs as a language regression task: comparison of zero- and few-shot GPT with fine-tuned models
JAMIA Open,
Augusto Garcia-Agundez, Julia L Kay, Jing Li, Milena Gianfrancesco, Baljeet Rai, Angela Hu, Gabriela Schmajuk, Jinoos Yazdany
The Role of Virtual Reality and Artificial Intelligence in Cognitive Pain Therapy: A Narrative Review
Current Pain and Headache Reports,
James S. Khan, and 7 more from outside UCSF
Altmetric score: 1Related to: Networking and Information Technology R&D (NITRD), Behavioral and Social Science, Rehabilitation, Pain Research, Bioengineering, Machine Learning and Artificial Intelligence, Mind and Body, Neurosciences, Chronic Pain
Reinforcement Learning for Robust Header Compression (ROHC) Under Model Uncertainty
IEEE Transactions on Machine Learning in Communications and Networking,
Shusen Jing [first], and 2 more from outside UCSF
A joint ESTRO and AAPM guideline for development, clinical validation and reporting of artificial intelligence models in radiation therapy
Radiotherapy and Oncology,
Mary Feng, and 17 more from outside UCSF
Altmetric score: 27
Cited 2 timesRelated to: Bioengineering, Networking and Information Technology R&D (NITRD), Radiation Oncology, Machine Learning and Artificial Intelligence, Cancer
Universal and extensible language-vision models for organ segmentation and tumor detection from abdominal computed tomography
Medical Image Analysis,
Kang Wang, Mehmet Can Yavuz, Yang Yang, and 8 more from outside UCSF
Altmetric score: 1
Cited 2 timesRelated to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Bioengineering
ChatGPT-4 as a Board-Certified Surgeon: A Pilot Study
medRxiv,
Tejas Sathe, and 5 more from outside UCSF
Altmetric score: 8Related to: Patient Safety, Clinical Research
Evaluation of a Novel Large Language Model (LLM) Powered Chatbot for Oral-Boards Scenarios
medRxiv,
Riley Brian, Tejas S. Sathe [last], and 8 more from outside UCSF
Altmetric score: 5
Cited 1 timesRelated to: Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence, Patient Safety, Clinical Research, Women's Health
A standardized protocol using clinical adjudication to define true infection status in patients presenting to the emergency department with suspected infections and/or sepsis
Diagnostic Microbiology and Infectious Disease,
Helen Cristina Stankiewicz Karita, and 18 more from outside UCSF
Altmetric score: 4Related to: Sepsis, Hematology, Infectious Diseases, Clinical Research
More than a “characterizing flavor”: Menthol at subliminal levels in tobacco products
Drug and Alcohol Dependence,
Andre Luiz Oliveira da Silva, Lauren K Lempert, Stanton A Glantz
Altmetric score: 9Related to: Tobacco, Tobacco Smoke and Health
More than a “characterizing flavor”: Menthol at subliminal levels in tobacco products
Drug and Alcohol Dependence,
Andre Luiz Oliveira da Silva, Lauren K Lempert, Stanton A Glantz
Altmetric score: 9Related to: Tobacco, Tobacco Smoke and Health
Cell Maps for Artificial Intelligence: AI-Ready Maps of Human Cell Architecture from Disease-Relevant Cell Lines
bioRxiv,
Kirsten Obernier, Antoine Forget, Nevan Krogan, Andrej Sali, and 29 more from outside UCSF
Altmetric score: 1Related to: Genetics, Human Genome, Networking and Information Technology R&D (NITRD), Data Science, Bioengineering, Biotechnology, Machine Learning and Artificial Intelligence
Assessing Large Language Models for Oncology Data Inference from Radiology Reports
medRxiv,
Li-Ching Chen [first], Travis Zack, Madhumita Sushil, Brenda Miao, Corynn Kasap, Atul Butte, Eric A. Collisson, Julian Hong [last], and 1 more from outside UCSF
Related to: Precision Medicine, Rare Diseases, Orphan Drug, Pancreatic Cancer, Biomedical Imaging, Digestive Diseases, Cancer
A proximal enhancer regulates RORA expression during early human Th17 cell differentiation
Clinical Immunology,
Alexander Marson, and 13 more from outside UCSF
Altmetric score: 5Related to: Genetics, Human Genome
Towards consistency in pediatric brain tumor measurements: Challenges, solutions, and the role of artificial intelligence-based segmentation
Neuro-Oncology,
Susan M Chang, Sabine Mueller, Michael Prados, and 18 more from outside UCSF
Altmetric score: 3
Cited 1 timesRelated to: Bioengineering, Rare Diseases, Brain Disorders, Brain Cancer, Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Orphan Drug, Cancer, Biomedical Imaging, Pediatric, Neurosciences
Generative AI Can Accurately Populate Vascular Quality Initiative Procedural Databases Using Narrative Operative Reports
Journal of Vascular Surgery,
Colleen P. Flanagan, Karen Trang, Joyce Nacario, Warren Gasper, Michael S. Conte, Peter Schneider, Elizabeth Wick, Allan M. Conway
Development and preliminary testing of Health Equity Across the AI Lifecycle (HEAAL): A framework for healthcare delivery organizations to mitigate the risk of AI solutions worsening health inequities
PLOS Digital Health,
Sara G. Murray, and 17 more from outside UCSF
Altmetric score: 2
Cited 2 timesRelated to: Bioengineering, Health Services, Networking and Information Technology R&D (NITRD), Data Science, Clinical Research, Machine Learning and Artificial Intelligence
Neuroecological links of the exposome and One Health
Neuron,
Agustin Ibanez [first], Harris A Eyre [last], and 12 more from outside UCSF
Altmetric score: 93
Cited 4 timesRelated to: Neurosciences
Neuroecological links of the exposome and One Health
Neuron,
Agustin Ibanez [first], Harris A Eyre [last], and 12 more from outside UCSF
Altmetric score: 93
Cited 4 timesRelated to: Neurosciences
Use of a Large Language Model to Assess Clinical Acuity of Adults in the Emergency Department
JAMA Network Open,
Christopher Y. K. Williams, Travis Zack, Brenda Y. Miao, Madhumita Sushil, Michelle Wang, Aaron E. Kornblith, Atul J. Butte
Altmetric score: 193
Cited 3 timesRelated to: Health Services, Clinical Research, Emergency Care
Applications of artificial intelligence in facial plastic and reconstructive surgery: a systematic review
Current Opinion in Otolaryngology & Head & Neck Surgery,
Spenser Souza [first], Rohith M. Bhethanabotla, and 1 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Clinical Research, Bioengineering
Vision–language foundation model for echocardiogram interpretation
Nature Medicine,
Neal Yuan, and 3 more from outside UCSF
Altmetric score: 105
Cited 2 timesRelated to: Bioengineering, Heart Disease, Biomedical Imaging, Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence, Cardiovascular
Further Reflections on the Use of Large Language Models in Pediatrics
JAMA Pediatrics,
Yulin Hswen, and 2 more from outside UCSF
Assessing the Performance of Artificial Intelligence Models: Insights from the American Society of Functional Neuroradiology Artificial Intelligence Competition
American Journal of Neuroradiology,
Bin Jiang, Burak Berksu Ozkara, Guangming Zhu, Derek Boothroyd, Jason W Allen, Daniel P Barboriak, Peter Chang, Cynthia Chan, Ruchir Chaudhari, Hui Chen, Anjeza Chukus, Victoria Ding, David Douglas, Christopher G Filippi, Adam E Flanders, Ryan Godwin, Syed Hashmi, Christopher Hess, Kevin Hsu, Yvonne W Lui, Joseph A Maldjian, Patrik Michel, Sahil S Nalawade, Vishal Patel, Prashant Raghavan, Haris I Sair, Jody Tanabe, Kirk Welker, Christopher T Whitlow, Greg Zaharchuk, Max Wintermark
Altmetric score: 2Related to: Biomedical Imaging, Bioengineering, Traumatic Head and Spine Injury, Physical Injury - Accidents and Adverse Effects, Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence, Neurosciences, Brain Disorders, Traumatic Brain Injury (TBI)