UCSF AI Publications
Integrating a host biomarker with a large language model for diagnosis of lower respiratory tract infection
Nature Communications,
Hoang Van Phan, Natasha Spottiswoode, Emily C. Lydon, Victoria T. Chu, Adolfo Cuesta, Alexander D. Kazberouk, Natalie L. Richmond, Padmini Deosthale, Carolyn S. Calfee, Charles R. Langelier
Altmetric score: 57Related to: Rare Diseases, Lung, Infectious Diseases, Clinical Research
Machine learning-based mortality prediction in critically ill patients with hypertension: comparative analysis, fairness, and interpretability
Frontiers in Artificial Intelligence,
Sirui Ding, and 3 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence, Bioengineering, Hypertension, Patient Safety, Cardiovascular, Brain Disorders, Networking and Information Technology R&D (NITRD), Data Science
Evaluating the reliability of large language models in answering FAQs for cataract surgery
Digital Health,
Hassan Asadigandomani, and 4 more from outside UCSF
Related to: Clinical Research, Patient Safety
Automating expert-level medical reasoning evaluation of large language models
npj Digital Medicine,
Yuen-Hei Chung, and 18 more from outside UCSF
Altmetric score: 1
Cited 1 timesZero-Shot PI-RADS Version 2.1 Scoring with ChatGPT-4 Turbo and Llama 3: Diagnostic Performance and Agreement with Abdominal Radiologists.
Radiology Imaging Cancer,
Spencer Behr, and 4 more from outside UCSF
Altmetric score: 1
Cited 1 timesRelated to: Biomedical Imaging, Prostate Cancer, Urologic Diseases, Cancer
Review of Artificial Intelligence for Clinical Use in Alzheimer's Disease and Related Dementias
Seminars in Neurology,
Andrew G. Breithaupt [first], Alice Tang, Emily W. Paolillo, Rowan Saloner, Katherine L. Possin, Charles C. Windon, Tanisha G. Hill-Jarrett, Andreas M. Rauschecker, Jet M. J. Vonk, Pedro Pinheiro-Chagas [last], and 4 more from outside UCSF
Altmetric score: 7Related to: Dementia, Alzheimer's Disease, Acquired Cognitive Impairment, Networking and Information Technology R&D (NITRD), Neurosciences, Behavioral and Social Science, Prevention, Brain Disorders, Clinical Research, Aging, Neurodegenerative, Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD), Machine Learning and Artificial Intelligence, Health Services, Bioengineering
Human level information extraction from clinical reports with finetuned language models
Scientific Reports,
Aidan Pace, Elaine Kim, Peter R. Carroll, Anobel Y. Odisho, Maggie Chung, Adam Yala [last], and 9 more from outside UCSF
Altmetric score: 3
Cited 1 timesRelated to: Clinical Research, Bioengineering, Networking and Information Technology R&D (NITRD)
Health Equity Considerations in the Age of Artificial Intelligence
Neurology,
Noriko Anderson, and 9 more from outside UCSF
Altmetric score: 48Related to: Social Determinants of Health, Networking and Information Technology R&D (NITRD), Behavioral and Social Science, Minority Health, Clinical Research, Health Disparities, Health Disparities and Racial or Ethnic Minority Health Research, Machine Learning and Artificial Intelligence, Patient Safety, Data Science, Bioengineering
Amplifying signal-to-noise: Responsible use of large language models in radiology publishing
Clinical Imaging,
Ali S Tejani, and 3 more from outside UCSF
Uncertainty-aware large language models for explainable disease diagnosis
npj Digital Medicine,
Yuen-Hei Chung, and 13 more from outside UCSF
Altmetric score: 2
Cited 2 timesRelated to: Machine Learning and Artificial Intelligence, Bioengineering
Integrating expert knowledge into large language models improves performance for psychiatric reasoning and diagnosis
Psychiatry Research,
Karthik V Sarma, Kaitlin E Hanss, Andrew J M Halls, Andrew Krystal, Daniel F Becker, Anne L Glowinski, Atul J Butte
Altmetric score: 2Related to: Clinical Research
A large language model-based approach to quantifying the effects of social determinants in liver transplant decisions
npj Digital Medicine,
Emily Robitschek [first], Asal Bastani, Kathryn Horwath, Savyon Sordean, Mark J. Pletcher, Jennifer C. Lai, Jin Ge, Irene Y. Chen [last], and 2 more from outside UCSF
Related to: Liver Disease, Basic Behavioral and Social Science, Health Disparities and Racial or Ethnic Minority Health Research, Health Disparities, Prevention, Behavioral and Social Science, Transplantation, Social Determinants of Health, Clinical Research, Health Services, Digestive Diseases, Mental Health, Substance Misuse, Minority Health
Extracting TNFi switching reasons and trajectories from real-world data using large language models
JAMIA Open,
Brenda Y Miao [first], Marie Binvignat, Augusto Garcia-Agundez, Christopher Yk Williams, Claire Q Miao, Ahmed Alaa, Vivek Rudrapatna, Atul J Butte, Gabriela Schmajuk, Jinoos Yazdany [last], and 1 more from outside UCSF
Related to: Clinical Research, Patient Safety
Limitations of large language models in clinical problem-solving arising from inflexible reasoning
Scientific Reports,
Kie Shidara, Danilo Bernardo [last], and 4 more from outside UCSF
Altmetric score: 4
Cited 6 timesLarge Language Models can Identify the Presence of MASH and Extract VCTE Measurements from Unstructured Documentation
Digestive Diseases and Sciences,
Aryana T. Far, Aryan Ayati, Jordan Guillot, Shadera Azzam, Vivek A. Rudrapatna, Jin Ge
Related to: Clinical Research
BioAgents: Bridging the gap in bioinformatics analysis with multi-agent systems
Scientific Reports,
Ahmed Alaa, and 8 more from outside UCSF
Altmetric score: 4
Cited 3 timesRelated to: Genetics, Biotechnology, Networking and Information Technology R&D (NITRD), Human Genome
BioAgents: Bridging the gap in bioinformatics analysis with multi-agent systems
Scientific Reports,
Ahmed Alaa, and 8 more from outside UCSF
Altmetric score:Related to: Human Genome, Genetics, Networking and Information Technology R&D (NITRD), Biotechnology
Adolescent Health and Generative AI—Risks and Benefits
JAMA Pediatrics,
Jason M. Nagata [first], Zain Memon, Oliver Huang, and 1 more from outside UCSF
Altmetric score: 21Related to: Basic Behavioral and Social Science, Sleep Research, Physical Activity, Networking and Information Technology R&D (NITRD), Pediatric Research Initiative, Behavioral and Social Science, Machine Learning and Artificial Intelligence, Mental Health
Large language models accurately extract aortic information from abdominal imaging reports in a large, real-world database
Journal of Vascular Surgery,
Colleen P Flanagan [first], Myra McLenon, Elizabeth M Lancaster, and 6 more from outside UCSF
Related to: Rare Diseases, Bioengineering, Biomedical Imaging, Cardiovascular, Machine Learning and Artificial Intelligence, Clinical Research, Networking and Information Technology R&D (NITRD)
Minimum Reporting Items for Clear Evaluation of Accuracy Reports of Large Language Models in Healthcare (MI-CLEAR-LLM): 2025 Updates
Korean Journal of Radiology,
Ali S. Tejani, and 6 more from outside UCSF
Altmetric score: 4Agentic Generative Artificial Intelligence System for Classification of Pathology-Confirmed Primary Progressive Aphasia Variants
medRxiv,
Chiara Gallingani, Zachary A Miller, Maria Luisa Mandelli, Howard J Rosen, Zoe Ezzes, Mia Lin, Diana Rodriguez, Lea T Grinberg, Salvatore Spina, William W Seeley, Bruce Miller, Maria Luisa Gorno-Tempini, Pedro Pinheiro-Chagas
Altmetric score: 3Related to: Frontotemporal Dementia (FTD), Dementia, Aging, Rare Diseases, Neurosciences, Brain Disorders, Alzheimer's Disease, Alzheimer's Disease Related Dementias (ADRD), Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD), Bioengineering, Biomedical Imaging, Acquired Cognitive Impairment, Aphasia, Clinical Research, Machine Learning and Artificial Intelligence, Neurodegenerative, Networking and Information Technology R&D (NITRD)
Artificial Intelligence Applications in Musculoskeletal Imaging
Current Reviews in Musculoskeletal Medicine,
Atlas Haddadi Avval, and 7 more from outside UCSF
Related to: Biomedical Imaging, Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Bioengineering
Building an analytical framework for tobacco-related information on social media: an exploratory analysis with generative AI assistance
BMC Public Health,
Eileen Han [first], Pamela Ling [last], and 1 more from outside UCSF
Cited 1 timesRelated to: Tobacco Smoke and Health, Tobacco, Substance Misuse, Behavioral and Social Science, Networking and Information Technology R&D (NITRD), Cancer, Machine Learning and Artificial Intelligence
An Exploratory Typology of Tobacco-Related Misleading Content on Social Media: Qualitative Analysis of Instagram and TikTok
Journal of Medical Internet Research,
Eileen Han, Joanne Chen Lyu, Pamela M Ling
Altmetric score: 1Related to: Behavioral and Social Science, Machine Learning and Artificial Intelligence, Prevention, Tobacco, Tobacco Smoke and Health, Networking and Information Technology R&D (NITRD)
A community‐driven vision for a new knowledge resource for AI
AI Magazine,
Sharat Israni, and 31 more from outside UCSF
A community‐driven vision for a new knowledge resource for AI
AI Magazine,
Sharat Israni, and 31 more from outside UCSF
A community‐driven vision for a new knowledge resource for AI
AI Magazine,
Sharat Israni, and 31 more from outside UCSF
Large Language Models in Population Oncology: A Contemporary Review on the Use of Large Language Models to Support Data Collection, Aggregation, and Analysis in Cancer Care and Research
JCO Clinical Cancer Informatics,
Ryzen Benson, Clodagh Kenny, Amir Ashraf Ganjouei, Michelle Zhao, Rami Darawsheh, Alexander Qian, Julian C. Hong
Altmetric score: 6Related to: Networking and Information Technology R&D (NITRD), Prevention, Data Science, Cancer
Eliminating the AI digital divide by building local capacity
PLOS Digital Health,
Sara G. Murray, and 46 more from outside UCSF
Cited 1 timesRelated to: Social Determinants of Health, Health Services, Clinical Research, Networking and Information Technology R&D (NITRD), Health Disparities and Racial or Ethnic Minority Health Research, Health Disparities, Rural Health
SUN-813 GLP-1 and Cancer Risk: AI Chatbot Responses
Journal of the Endocrine Society,
Gloria Wu, Ethan Pan, and 5 more from outside UCSF
Related to: Cancer, Networking and Information Technology R&D (NITRD), Prevention, Lung, Machine Learning and Artificial Intelligence, Lung Cancer
SUN-813 GLP-1 and Cancer Risk: AI Chatbot Responses
Journal of the Endocrine Society,
Gloria Wu, Ethan Pan, and 5 more from outside UCSF
Related to: Cancer, Machine Learning and Artificial Intelligence, Prevention, Networking and Information Technology R&D (NITRD), Lung Cancer, Lung
SUN-806 Do Customized Chatbots Help with Diabetes Management?
Journal of the Endocrine Society,
Adam Shams [first], Gloria Wu, Ethan Pan, Riki Toram, Viki V Toram, and 3 more from outside UCSF
Related to: Diabetes
Protocol for a randomized clinical trial to evaluate the effectiveness of a technology-assisted motivational interviewing (TAMI) chatbot on smoking cessation
Contemporary Clinical Trials,
Brian Borsari [first], Meredith C Meacham, Jing Cheng, Anita S Hargrave-Bouagnon, Isaac A Mirzadegan, Faris Omeragic, John Layton, Jason Satterfield [last], and 3 more from outside UCSF
Related to: Tobacco Smoke and Health, Social Determinants of Health, Health Disparities and Racial or Ethnic Minority Health Research, Comparative Effectiveness Research, Minority Health, Health Disparities, Dissemination and Implementation Research, Prevention, Cancer, Lung, Substance Misuse, Clinical Research, Drug Abuse (NIDA only), Clinical Trials and Supportive Activities, Tobacco, Machine Learning and Artificial Intelligence, Behavioral and Social Science, Telehealth, Primary Health Care, Lung Cancer
SUN-813 GLP-1 and Cancer Risk: AI Chatbot Responses
Journal of the Endocrine Society,
Gloria Wu, Aadjot Sidhu, Ethan Pan, and 4 more from outside UCSF
Related to: Lung, Cancer, Lung Cancer, Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Prevention
SUN-806 Do Customized Chatbots Help with Diabetes Management?
Journal of the Endocrine Society,
Adam Shams [first], Gloria Wu, Ethan Pan, Riki Toram, Viki V Toram, and 3 more from outside UCSF
Related to: Diabetes
SUN-806 Do Customized Chatbots Help with Diabetes Management?
Journal of the Endocrine Society,
Adam Shams [first], Gloria Wu, Ethan Pan, Riki Toram, Viki V Toram, and 3 more from outside UCSF
Related to: Diabetes
Grounded large language models for diagnostic prediction in real-world emergency department settings
JAMIA Open,
Sami Barrit [last], and 9 more from outside UCSF
Related to: Patient Safety, Clinical Research, Emergency Care, Bioengineering, Networking and Information Technology R&D (NITRD)
Grounded large language models for diagnostic prediction in real-world emergency department settings
JAMIA Open,
Sami Barrit [last], and 9 more from outside UCSF
Related to: Bioengineering, Clinical Research, Emergency Care, Patient Safety, Networking and Information Technology R&D (NITRD)
Comparison of Qualitative Analyses Conducted by Artificial Intelligence Versus Traditional Methods
American Journal of Pharmaceutical Education,
Marcela Salazar [first], May Chaw, Yvette Hellier, Katherine Gruenberg [last], and 1 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence
Why AI Governance Should Be a Focal Issue for Gerontology
The Gerontologist,
Anita Ho [last], and 1 more from outside UCSF
Related to: Networking and Information Technology R&D (NITRD), Aging, Machine Learning and Artificial Intelligence
A SNAPpy use of large language models: using large language models to classify treatment plans in pediatric acute otitis media
Journal of the American Medical Informatics Association,
Jessica J Pourian, Ben Michaels, Anh Vo, A Jay Holmgren, Augusto Garcia-Agundez, Valerie Flaherman
Altmetric score: 1Related to: Infectious Diseases, Pediatric Research Initiative, Otitis Media
A SNAPpy use of large language models: using large language models to classify treatment plans in pediatric acute otitis media
Journal of the American Medical Informatics Association,
Jessica J Pourian, Ben Michaels, Anh Vo, A Jay Holmgren, Augusto Garcia-Agundez, Valerie Flaherman
Altmetric score: 2Related to: Pediatric Research Initiative, Infectious Diseases, Otitis Media
Collaborative intelligence in AI: Evaluating the performance of a council of AIs on the USMLE
PLOS Digital Health,
Aamir Javaid, and 15 more from outside UCSF
Altmetric score: 61
Cited 1 timesThe evaluation illusion of large language models in medicine
npj Digital Medicine,
Irene Y. Chen, and 3 more from outside UCSF
Altmetric score: 9
Cited 4 timesHow can artificial intelligence transform the training of medical students and physicians?
The Lancet Digital Health,
Jasmine Chiat Ling Ong, and 7 more from outside UCSF
Altmetric score: 69Related to: Clinical Research, Networking and Information Technology R&D (NITRD), Health Services, Bioengineering, Machine Learning and Artificial Intelligence
Characterizing Dementia Phenotypes from Unstructured EHR Notes with Generative AI and Interpretable Machine Learning
medRxiv,
Alice S. Tang, Billy Z.D. Zeng, Katherine P. Rankin, Bruce Miller, Maria Luisa Gorno-Tempini, William W. Seeley, Howard J. Rosen, Gil D. Rabinovici, Tomiko T. Oskotsky, Marina Sirota, Pedro Pinheiro-Chagas
Altmetric score: 2Related to: Basic Behavioral and Social Science, Neurosciences, Neurodegenerative, Brain Disorders, Networking and Information Technology R&D (NITRD), Clinical Research, Mental Health, Patient Safety, Acquired Cognitive Impairment, Behavioral and Social Science, Aging, Data Science, Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD), Alzheimer's Disease Related Dementias (ADRD), Machine Learning and Artificial Intelligence, Dementia, Alzheimer's Disease, Rare Diseases
Geriatricians Leading Innovation: Collaborating to Enhance Care as We Age
Journal of the American Geriatrics Society,
Eric Widera, and 4 more from outside UCSF
Altmetric score: 2Related to: Aging, Clinical Research, Health Services
A longitudinal analysis of declining medical safety messaging in generative AI models
npj Digital Medicine,
Ahmed M. Alaa, and 2 more from outside UCSF
Altmetric score: 64
Cited 3 timesRelated to: Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence
A longitudinal analysis of declining medical safety messaging in generative AI models
npj Digital Medicine,
Ahmed M. Alaa, and 2 more from outside UCSF
Altmetric score:Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD)
Unsupervised Large Language Models to Identify Topics in Cancer Center Patient Portal Messages
JCO Clinical Cancer Informatics,
Ji Hyun Chang, Amir Ashraf-Ganjouei, Isabel Friesner, Ryzen Benson, Travis Zack, Sumi Sinha, Jason Chan, Steve Braunstein, Amy Lin, Lisa Singer, Julian C. Hong
Cited 1 timesRelated to: Patient Safety, Clinical Research, Networking and Information Technology R&D (NITRD), Cancer, Machine Learning and Artificial Intelligence