UCSF AI Publications
Extracting TNFi switching reasons and trajectories from real-world data using large language models
JAMIA Open,
Brenda Y Miao [first], Marie Binvignat, Augusto Garcia-Agundez, Christopher Yk Williams, Claire Q Miao, Ahmed Alaa, Vivek Rudrapatna, Atul J Butte, Gabriela Schmajuk, Jinoos Yazdany [last], and 1 more from outside UCSF
Related to: Clinical Research, Patient Safety
Limitations of large language models in clinical problem-solving arising from inflexible reasoning
Scientific Reports,
Kie Shidara, Danilo Bernardo [last], and 4 more from outside UCSF
Altmetric score: 1
Cited 1 timesLarge Language Models can Identify the Presence of MASH and Extract VCTE Measurements from Unstructured Documentation
Digestive Diseases and Sciences,
Aryana T. Far, Aryan Ayati, Jordan Guillot, Shadera Azzam, Vivek A. Rudrapatna, Jin Ge
Related to: Clinical Research
BioAgents: Bridging the gap in bioinformatics analysis with multi-agent systems
Scientific Reports,
Ahmed Alaa, and 8 more from outside UCSF
Altmetric score:Related to: Human Genome, Genetics, Networking and Information Technology R&D (NITRD), Biotechnology
Adolescent Health and Generative AI—Risks and Benefits
JAMA Pediatrics,
Jason M. Nagata [first], Zain Memon, Oliver Huang, and 1 more from outside UCSF
Altmetric score: 21Related to: Behavioral and Social Science, Machine Learning and Artificial Intelligence, Pediatric Research Initiative, Mental Health, Sleep Research, Basic Behavioral and Social Science, Physical Activity, Networking and Information Technology R&D (NITRD)
BioAgents: Bridging the gap in bioinformatics analysis with multi-agent systems
Scientific Reports,
Ahmed Alaa, and 8 more from outside UCSF
Altmetric score: 3
Cited 2 timesRelated to: Genetics, Human Genome, Biotechnology, Networking and Information Technology R&D (NITRD)
Minimum Reporting Items for Clear Evaluation of Accuracy Reports of Large Language Models in Healthcare (MI-CLEAR-LLM): 2025 Updates
Korean Journal of Radiology,
Ali S. Tejani, and 6 more from outside UCSF
Artificial Intelligence Applications in Musculoskeletal Imaging
Current Reviews in Musculoskeletal Medicine,
Atlas Haddadi Avval, and 7 more from outside UCSF
Related to: Bioengineering, Biomedical Imaging, Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence
Agentic Generative Artificial Intelligence System for Classification of Pathology-Confirmed Primary Progressive Aphasia Variants
medRxiv,
Chiara Gallingani, Zachary A Miller, Maria Luisa Mandelli, Howard J Rosen, Zoe Ezzes, Mia Lin, Diana Rodriguez, Lea T Grinberg, Salvatore Spina, William W Seeley, Bruce Miller, Maria Luisa Gorno-Tempini, Pedro Pinheiro-Chagas
Altmetric score: 3Related to: Neurodegenerative, Frontotemporal Dementia (FTD), Brain Disorders, Bioengineering, Acquired Cognitive Impairment, Neurosciences, Alzheimer's Disease Related Dementias (ADRD), Rare Diseases, Networking and Information Technology R&D (NITRD), Aphasia, Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD), Clinical Research, Aging, Dementia, Machine Learning and Artificial Intelligence, Biomedical Imaging, Alzheimer's Disease
Building an analytical framework for tobacco-related information on social media: an exploratory analysis with generative AI assistance
BMC Public Health,
Eileen Han [first], Pamela Ling [last], and 1 more from outside UCSF
Related to: Networking and Information Technology R&D (NITRD), Substance Misuse, Tobacco, Machine Learning and Artificial Intelligence, Tobacco Smoke and Health, Behavioral and Social Science, Cancer
A community‐driven vision for a new knowledge resource for AI
AI Magazine,
Sharat Israni, and 31 more from outside UCSF
A community‐driven vision for a new knowledge resource for AI
AI Magazine,
Sharat Israni, and 31 more from outside UCSF
A community‐driven vision for a new knowledge resource for AI
AI Magazine,
Sharat Israni, and 31 more from outside UCSF
Large Language Models in Population Oncology: A Contemporary Review on the Use of Large Language Models to Support Data Collection, Aggregation, and Analysis in Cancer Care and Research
JCO Clinical Cancer Informatics,
Ryzen Benson, Clodagh Kenny, Amir Ashraf Ganjouei, Michelle Zhao, Rami Darawsheh, Alexander Qian, Julian C. Hong
Altmetric score: 6Related to: Networking and Information Technology R&D (NITRD), Cancer, Data Science, Prevention
Eliminating the AI digital divide by building local capacity
PLOS Digital Health,
Sara G. Murray, and 46 more from outside UCSF
Related to: Rural Health, Health Services, Clinical Research, Social Determinants of Health, Health Disparities and Racial or Ethnic Minority Health Research, Networking and Information Technology R&D (NITRD), Health Disparities
SUN-813 GLP-1 and Cancer Risk: AI Chatbot Responses
Journal of the Endocrine Society,
Gloria Wu, Ethan Pan, and 5 more from outside UCSF
Related to: Cancer, Networking and Information Technology R&D (NITRD), Prevention, Lung, Machine Learning and Artificial Intelligence, Lung Cancer
SUN-813 GLP-1 and Cancer Risk: AI Chatbot Responses
Journal of the Endocrine Society,
Gloria Wu, Ethan Pan, and 5 more from outside UCSF
Related to: Cancer, Machine Learning and Artificial Intelligence, Prevention, Networking and Information Technology R&D (NITRD), Lung Cancer, Lung
SUN-806 Do Customized Chatbots Help with Diabetes Management?
Journal of the Endocrine Society,
Adam Shams [first], Gloria Wu, Ethan Pan, Riki Toram, Viki V Toram, and 3 more from outside UCSF
Related to: Diabetes
Protocol for a randomized clinical trial to evaluate the effectiveness of a technology-assisted motivational interviewing (TAMI) chatbot on smoking cessation
Contemporary Clinical Trials,
Brian Borsari [first], Meredith C Meacham, Jing Cheng, Anita S Hargrave, Isaac A Mirzadegan, Faris Omeragic, John Layton, Jason Satterfield [last], and 3 more from outside UCSF
Related to: Prevention, Machine Learning and Artificial Intelligence, Substance Misuse, Clinical Research, Telehealth, Behavioral and Social Science, Primary Health Care, Lung Cancer, Clinical Trials and Supportive Activities, Drug Abuse (NIDA only), Comparative Effectiveness Research, Tobacco, Dissemination and Implementation Research, Tobacco Smoke and Health, Health Disparities and Racial or Ethnic Minority Health Research, Minority Health, Social Determinants of Health, Health Disparities, Lung, Cancer
SUN-813 GLP-1 and Cancer Risk: AI Chatbot Responses
Journal of the Endocrine Society,
Gloria Wu, Aadjot Sidhu, Ethan Pan, and 4 more from outside UCSF
Related to: Prevention, Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence, Lung Cancer, Lung, Cancer
SUN-806 Do Customized Chatbots Help with Diabetes Management?
Journal of the Endocrine Society,
Adam Shams [first], Gloria Wu, Ethan Pan, Riki Toram, Viki V Toram, and 3 more from outside UCSF
Related to: Diabetes
SUN-806 Do Customized Chatbots Help with Diabetes Management?
Journal of the Endocrine Society,
Adam Shams [first], Gloria Wu, Ethan Pan, Riki Toram, Viki V Toram, and 3 more from outside UCSF
Related to: Diabetes
Grounded large language models for diagnostic prediction in real-world emergency department settings
JAMIA Open,
Sami Barrit [last], and 9 more from outside UCSF
Related to: Patient Safety, Clinical Research, Emergency Care, Bioengineering, Networking and Information Technology R&D (NITRD)
Grounded large language models for diagnostic prediction in real-world emergency department settings
JAMIA Open,
Sami Barrit [last], and 9 more from outside UCSF
Related to: Emergency Care, Networking and Information Technology R&D (NITRD), Bioengineering, Patient Safety, Clinical Research
Comparison of Qualitative Analyses Conducted by Artificial Intelligence Versus Traditional Methods
American Journal of Pharmaceutical Education,
Marcela Salazar [first], May Chaw, Yvette Hellier, Katherine Gruenberg [last], and 1 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence
Why AI Governance Should Be a Focal Issue for Gerontology
The Gerontologist,
Anita Ho [last], and 1 more from outside UCSF
Related to: Networking and Information Technology R&D (NITRD), Aging, Machine Learning and Artificial Intelligence
A SNAPpy use of large language models: using large language models to classify treatment plans in pediatric acute otitis media
Journal of the American Medical Informatics Association,
Jessica J Pourian, Ben Michaels, Anh Vo, A Jay Holmgren, Augusto Garcia-Agundez, Valerie Flaherman
Altmetric score: 2Related to: Pediatric Research Initiative, Otitis Media, Infectious Diseases
Collaborative intelligence in AI: Evaluating the performance of a council of AIs on the USMLE
PLOS Digital Health,
Aamir Javaid, and 15 more from outside UCSF
Altmetric score: 61A SNAPpy use of large language models: using large language models to classify treatment plans in pediatric acute otitis media
Journal of the American Medical Informatics Association,
Jessica J Pourian, Ben Michaels, Anh Vo, A Jay Holmgren, Augusto Garcia-Agundez, Valerie Flaherman
Altmetric score: 1Related to: Infectious Diseases, Pediatric Research Initiative, Otitis Media
The evaluation illusion of large language models in medicine
npj Digital Medicine,
Irene Y. Chen, and 3 more from outside UCSF
Altmetric score: 11How can artificial intelligence transform the training of medical students and physicians?
The Lancet Digital Health,
Jasmine Chiat Ling Ong, and 7 more from outside UCSF
Altmetric score: 63Related to: Networking and Information Technology R&D (NITRD), Health Services, Clinical Research, Machine Learning and Artificial Intelligence, Bioengineering
Geriatricians Leading Innovation: Collaborating to Enhance Care as We Age
Journal of the American Geriatrics Society,
Eric Widera, and 4 more from outside UCSF
Altmetric score: 2Related to: Aging, Clinical Research, Health Services
A longitudinal analysis of declining medical safety messaging in generative AI models
npj Digital Medicine,
Ahmed M. Alaa, and 2 more from outside UCSF
Altmetric score: 65
Cited 3 timesRelated to: Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence
A longitudinal analysis of declining medical safety messaging in generative AI models
npj Digital Medicine,
Ahmed M. Alaa, and 2 more from outside UCSF
Altmetric score:Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD)
Unsupervised Large Language Models to Identify Topics in Cancer Center Patient Portal Messages
JCO Clinical Cancer Informatics,
Ji Hyun Chang, Amir Ashraf-Ganjouei, Isabel Friesner, Ryzen Benson, Travis Zack, Sumi Sinha, Jason Chan, Steve Braunstein, Amy Lin, Lisa Singer, Julian C. Hong
Cited 1 timesRelated to: Patient Safety, Clinical Research, Cancer, Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD)
Abortion AI: Toward an equity-centered research agenda for AI and abortion
Contraception,
Juliana Friend, Claire D Brindis, Ushma D Upadhyay
Altmetric score: 1Related to: Clinical Research, Behavioral and Social Science, Contraception/Reproduction, Machine Learning and Artificial Intelligence
Teaching AI for Radiology Applications: A Multisociety‑Recommended Syllabus from the AAPM, ACR, RSNA, and SIIM
Medical Physics,
Matt Lungren, Marc Kohli, John Mongan, and 28 more from outside UCSF
Altmetric score: 2Related to: Biomedical Imaging, Machine Learning and Artificial Intelligence, Bioengineering, Data Science, Precision Medicine, Clinical Research, Networking and Information Technology R&D (NITRD)
Environment Scan of Generative AI Infrastructure for Clinical and Translational Science.
arXiv,
Ida Sim, and 56 more from outside UCSF
Related to: Clinical Research, Networking and Information Technology R&D (NITRD)
Teaching AI for Radiology Applications: A Multisociety‑Recommended Syllabus from the AAPM, ACR, RSNA, and SIIM
Medical Physics,
Matt Lungren, Marc Kohli, John Mongan, and 28 more from outside UCSF
Altmetric score: 2Related to: Data Science, Biomedical Imaging, Precision Medicine, Networking and Information Technology R&D (NITRD), Clinical Research, Bioengineering, Machine Learning and Artificial Intelligence
Teaching AI for Radiology Applications: A Multisociety‑Recommended Syllabus from the AAPM, ACR, RSNA, and SIIM
Medical Physics,
Matt Lungren, Marc Kohli, John Mongan, and 28 more from outside UCSF
Altmetric score: 3Related to: Biomedical Imaging, Networking and Information Technology R&D (NITRD), Bioengineering, Precision Medicine, Clinical Research, Machine Learning and Artificial Intelligence, Data Science
Bridging the Discharge Quality Gap by Focusing on the Fundamental Five
Journal of General Internal Medicine,
Matthew Sakumoto [first], and 2 more from outside UCSF
Altmetric score: 15The Ethical Boundaries of Chairside Generative Artificial Intelligence in Dental Education
Journal of Dental Education,
Sonal Anand, Ram Vaderhobli
Altmetric score: 1
Cited 1 timesRelated to: Machine Learning and Artificial Intelligence, Bioengineering, Dental/Oral and Craniofacial Disease, Patient Safety, Networking and Information Technology R&D (NITRD)
Development of a RAG-based Expert LLM for Clinical Support in Radiation Oncology
medRxiv,
Julian C. Hong, and 5 more from outside UCSF
Altmetric score: 3Related to: Networking and Information Technology R&D (NITRD), Cancer, Radiation Oncology
Development of a RAG-based Expert LLM for Clinical Support in Radiation Oncology
medRxiv,
Julian C. Hong, and 5 more from outside UCSF
Altmetric score: 3Related to: Networking and Information Technology R&D (NITRD), Cancer, Radiation Oncology
Artificial intelligence and medical diagnosis: past, present and future
Diagnosis,
Sumant Ranji [last], and 3 more from outside UCSF
Altmetric score: 1Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD)
Preclinical Perspectives on Disorders of the Temporomandibular Joint: Tracing the Past, Navigating the Present, and Shaping the Future
Journal of Pain,
Tamara Alliston, and 37 more from outside UCSF
Altmetric score:Related to: Mental Health, Behavioral and Social Science, Pain Research, Clinical Research, Temporomandibular Muscle/Joint Disorder (TMJD), Women's Health, Dental/Oral and Craniofacial Disease, Chronic Pain, Neurosciences
Clinical Sentiment Analysis by Large Language Models Enhances Prediction of Hepatorenal Syndrome
Gastro Hep Advances,
Mason Lai, Cynthia Fenton, Jessica Rubin, Chiung-Yu Huang, Mark Pletcher, Jennifer C. Lai, Giuseppe Cullaro, Jin Ge
Altmetric score: 19Related to: Digestive Diseases, Clinical Research
Simulated Reasoning and Self-Verification in Generalist Large Language Models for Psychiatric Diagnostic Performance: Cross-Sectional Study
medRxiv,
Karthik V Sarma, Kaitlin E Hanss, Andrew J M Halls, Daniel F Becker, Anne L Glowinski, Andrew Krystal
Simulated Reasoning and Self-Verification in Generalist Large Language Models for Psychiatric Diagnostic Performance: Cross-Sectional Study
medRxiv,
Karthik V Sarma, Kaitlin E Hanss, Andrew J M Halls, Daniel F Becker, Anne L Glowinski, Andrew Krystal
Comparative Safety Profiles of Ocrelizumab and Rituximab in Multiple Sclerosis Treatment Using Real‐World Evidence
Annals of Neurology,
Gabriel Cerono, Bruce A.C. Cree, Stephen L. Hauser, Sergio E. Baranzini
Altmetric score: 9Related to: Brain Disorders, Multiple Sclerosis, Autoimmune Disease, Neurodegenerative, Clinical Research, Neurosciences