UCSF AI Publications
Hepatology e-consult responses generated by artificial intelligence demonstrate accuracy but require human oversight
Hepatology Communications,
Holly K.T. Huang [first], Michelle Y. Li, Lisa X. Deng, Charles E. McCulloch, Mark J. Pletcher, Jennifer C. Lai, Bilal Hameed, Jin Ge [last], and 2 more from outside UCSF
Altmetric score:Related to: Liver Disease, Digestive Diseases, Clinical Research
Advances in LLM Reasoning Enable Flexibility in Clinical Problem-Solving.
AMIA Joint Summits on Translational Science Proceedings,
Kie Shidara [first], Danilo Bernardo [last], and 5 more from outside UCSF
Altmetric score:Large language model chatbot-based text-to-SQL application for database analyses in liver diseases and hepatology research
JAMIA Open,
Steve Sun, Joseph Owens, Victor Galvez, Ki Lai, Jin Ge [last], and 6 more from outside UCSF
Altmetric score:Related to: Networking and Information Technology R&D (NITRD), Cancer, Machine Learning and Artificial Intelligence, Liver Cancer, Liver Disease, Rare Diseases, Digestive Diseases
The Utility of Large Language Models to Assist With Emergency Triage Decisions Within Otolaryngology
Otolaryngology,
Tokunbo Ayeni, and 14 more from outside UCSF
Altmetric score:Related to: Clinical Research, Health Services, Emergency Care
Custom and Off-the-Shelf Large Language Models Routinely Misinterpret Implant Technique Guides
JBJS Open Access,
Stefano A. Bini, and 7 more from outside UCSF
Altmetric score:Related to: Networking and Information Technology R&D (NITRD), Bioengineering, Machine Learning and Artificial Intelligence
Computable Structured Phenotype Versus Large Language Model Identification of Opioid Use Disorder Using Electronic Health Record Data
Annals of Emergency Medicine,
Melanie F Molina [first], Cynthia Fenton, Kathy T LeSaint, Michael A Kohn, Aaron E Kornblith [last], and 1 more from outside UCSF
Altmetric score:Related to: Opioid Misuse and Addiction, Brain Disorders, Emergency Care, Drug Abuse (NIDA only), Clinical Research, Opioids, Substance Misuse
AI safety evaluation in an underrepresented population: real-world performance of clinical decision support and frontier language models on Medicaid patient messaging triage
Research Square,
Sanjay Basu [first], and 6 more from outside UCSF
Altmetric score:Related to: Health Services, Clinical Research, Machine Learning and Artificial Intelligence, Patient Safety, Networking and Information Technology R&D (NITRD)
A Large Language Model for Extracting Post-marketing Adverse Drug Events from Clinical Notes in the Electronic Health Record
Drug Safety,
Dana Ludwig [first], Michelle Wang, Trang Trinh [last], and 1 more from outside UCSF
Altmetric score:Related to: Patient Safety
Redesigning trauma‐focused interventions to address capacity challenges in mental health systems
Journal of Traumatic Stress,
Nicholas Holder, and 3 more from outside UCSF
Altmetric score:Related to: Health Services, Brain Disorders, Clinical Research, Mental Illness, Anxiety Disorders, Comparative Effectiveness Research, Mental Health, Post-Traumatic Stress Disorder (PTSD)
Simulated Reasoning and Self-Verification for Psychiatric Diagnosis in Generalist Large Language Models: Comparative Evaluation
JMIR AI,
Karthik V Sarma, Kaitlin E Hanss, Andrew J M Halls, Daniel F Becker, Anne L Glowinski, Andrew D Krystal
Altmetric score:Mitigating hallucinations in healthcare AI: a systematic review of evidence-based strategies
BMC Health Services Research,
Sanjay Basu [first], and 1 more from outside UCSF
Altmetric score:Human-AI co-design for clinical prediction models
npj Digital Medicine,
Jean Feng [first], Avni Kothari, Patrick Vossler, Andrew Bishara, Lucas Zier, Newton Addo, Aaron Kornblith, and 2 more from outside UCSF
Altmetric score:Related to: Clinical Research, Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Bioengineering, Physical Injury - Accidents and Adverse Effects
AI-Assisted Formative Assessment in Clinical Education: From Algorithms to Agency
JMIR Medical Education,
Tina Mai [last], and 2 more from outside UCSF
Altmetric score:Related to: Machine Learning and Artificial Intelligence, Bioengineering, Networking and Information Technology R&D (NITRD)
Offline reinforcement learning for care management: addressing sparse rewards, temporal dependencies, and fairness in Medicaid populations
npj Digital Public Health,
Sanjay Basu [first], and 6 more from outside UCSF
Altmetric score:Related to: Behavioral and Social Science, Health Disparities, Health Services, Health Disparities and Racial or Ethnic Minority Health Research, Basic Behavioral and Social Science, Clinical Research, Social Determinants of Health
Artificial Intelligence Tools in Psychiatric Education: Innovating While Maintaining Human Connection
Academic Psychiatry,
Andreea L. Seritan [first], and 10 more from outside UCSF
Altmetric score:Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Data Science
Emerging applications of traditional and generative artificial intelligence in liver transplantation.
Liver Transplantation,
William H Ge [first], Andrew Bishara, Hillary Braun, Jin Ge [last], and 1 more from outside UCSF
Altmetric score:Related to: Clinical Research, Precision Medicine, Machine Learning and Artificial Intelligence, Data Science, Digestive Diseases, Patient Safety, Liver Disease, Chronic Liver Disease and Cirrhosis, Bioengineering, Networking and Information Technology R&D (NITRD), Biomedical Imaging, Organ Transplantation, Transplantation
Edge-Hosted LLM-Assisted NICU Discharge Summary Generation: Field-Level Evaluation Using a Clinician-Defined Rubric
Healthcare,
Yao Sun, and 5 more from outside UCSF
Altmetric score:Related to: Perinatal Period - Conditions Originating in Perinatal Period, Pediatric Research Initiative, Clinical Research, Infant Mortality
GIVersa-Endoscopy: A Large Language Model-Based AI Assistant for Endoscopy Sedation Triage
Clinical Gastroenterology and Hepatology,
Lakshmipriya Subbaraj, Albert Dang, Steve Sun, Joseph Owens, Ki Lai, Kendall Beck, Jin Ge
Altmetric score:Beyond translation: a patient-centered research agenda for artificial intelligence interpreter services in healthcare
npj Digital Medicine,
Alicia Fernandez, and 11 more from outside UCSF
Altmetric score: 2Related to: Clinical Research, Bioengineering, Machine Learning and Artificial Intelligence
Digital Media Use and Psychosocial Health among Adolescent Boys and Young Men
Current Psychiatry Reports,
Jason M. Nagata [first], Patrick Low, Eliot D. Lee, Selena Yu, Alicia W. Leong, Kevin Bao, Jennifer H. Wong, and 2 more from outside UCSF
Altmetric score: 15Related to: Social Determinants of Health, Prevention, Brain Disorders, Mental Health, Behavioral and Social Science, Pediatric Research Initiative, Machine Learning and Artificial Intelligence, Clinical Research, Adolescent Sexual Activity
Large language models to infer depression in patients with neurological conditions
BMJ Neurology Open,
Maya Julian-Kwong, Shane Poole, Kyra Henderson, Jaeleene Wijangco, Nikki Sisodia, Jeffrey Marc Gelfand, Chu-Yueh Guo, Riley Bove
Altmetric score: 1Related to: Brain Disorders, Depression, Autoimmune Disease, Mental Health, Multiple Sclerosis, Health Services, Clinical Research, Neurosciences, Neurodegenerative
The chief pharmacy officer’s role in integrating artificial intelligence across the enterprise
American Journal of Health-System Pharmacy,
Kendall Gross, and 4 more from outside UCSF
Extracting adverse event nature, severity, timelines and resulting interventions from clinical notes of patients receiving CAR-T therapy using large language models
medRxiv,
Jordan Guillot, Brenda Miao, Arvind Suresh, Madhumita Sushil, Christopher Yk Williams, Rohit Vashisht, Tomiko T. Oskotsky, Marina Sirota, Atul J. Butte
Altmetric score: 2Related to: Patient Safety, Biotechnology, Gene Therapy, Genetics
Decreasing Administrative Effort Related to Non-Approval of Image-guidED Procedures Using Large Language Models – The DENIED-AI Pilot Study
Academic Radiology,
Xiao Wu, and 8 more from outside UCSF
Retrieval-Augmented Generation in Oncology: Promises, Pitfalls, and Early Applications
AI in Precision Oncology,
Julian Hong [last], and 9 more from outside UCSF
Altmetric score: 20Related to: Cancer, Precision Medicine, Patient Safety, Genetics, Cancer Genomics, Networking and Information Technology R&D (NITRD), Human Genome
Deriving the OTA/AO fracture classification from routinely collected radiology reports using a large language model
OTA International The Open Access Journal of Orthopaedic Trauma,
Stephanie Hu [first], Timothy Keeley, Ryan Halvorson, Meir T. Marmor [last], and 7 more from outside UCSF
Related to: Biomedical Imaging
Performance of a large language model on the reasoning tasks of a physician
Science,
Robert Gallo, and 24 more from outside UCSF
Altmetric score: 1225
Cited 6 timesRelated to: Clinical Research, Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD)
Large language models for automated and audience-tailored labeling of latent classes
JAMIA Open,
Fatemeh Gholi Zadeh Kharrat [first], Wolf Mehling, C Anthony Hunt, Jeffrey Lotz, Thomas A Peterson, and 60 more from outside UCSF
Related to: Clinical Research, Machine Learning and Artificial Intelligence, Neurosciences, Social Determinants of Health, Behavioral and Social Science, Chronic Pain, Back Pain, Mental Health, Pain Research, Basic Behavioral and Social Science
Large language models for automated and audience-tailored labeling of latent classes
JAMIA Open,
Fatemeh Gholi Zadeh Kharrat [first], Wolf Mehling, C Anthony Hunt, Jeffrey Lotz, Thomas A Peterson, Jeannie Bailey, Noah Bonnheim, J Russell Huie, Roland Krug, Conor O’Neill, and 55 more from outside UCSF
Related to: Chronic Pain, Behavioral and Social Science, Clinical Research, Pain Research, Back Pain, Basic Behavioral and Social Science, Social Determinants of Health, Neurosciences, Machine Learning and Artificial Intelligence, Mental Health
Problem representation in the age of artificial intelligence: the state of a dying art?
Diagnosis,
Gurpreet Dhaliwal, and 4 more from outside UCSF
Altmetric score: 2Related to: Machine Learning and Artificial Intelligence
Are LLM-generated plain language summaries truly understandable? A large-scale crowdsourced evaluation
Journal of Biomedical Informatics,
Jae Ho Sohn, and 3 more from outside UCSF
Altmetric score:
Cited 1 timesRelated to: Basic Behavioral and Social Science, Behavioral and Social Science, Clinical Research, Machine Learning and Artificial Intelligence
Use of the Dynamic Systems Development Method to Inform Technology-Assisted Motivational Interviewing (TAMI) for Tobacco Cessation: Qualitative Study
JMIR Formative Research,
Brian Borsari [first], Joannalyn Delacruz, John Layton, Karla D Llanes, Isaac A Mirzadegan, Jing Cheng, Anita S Hargrave-Bouagnon, Meredith C Meacham, Jason Satterfield [last], and 2 more from outside UCSF
Altmetric score:Related to: Behavioral and Social Science, Prevention, Cancer, Bioengineering, Dissemination and Implementation Research, Machine Learning and Artificial Intelligence, Substance Misuse, Networking and Information Technology R&D (NITRD), Tobacco Smoke and Health, Drug Abuse (NIDA only), Tobacco, Clinical Research
Pre‐Imaging Clinical Factors Associated With Cardiac MR Image Quality Using Large Language Model‐Enabled Data Extraction
Journal of Magnetic Resonance Imaging,
Hong Yu, Masha Bondarenko, Ali Nowroozi, Yoo Jin Lee, Adrian Serapio, Punita Kaveti, Jae Ho Sohn
Cited 1 timesRelated to: Heart Disease, Biomedical Imaging, Cardiovascular, Bioengineering, Patient Safety, Clinical Research
Updating Neurology® Journals' Policies on AI Use, Reporting of Genetic Studies, and Protocols for Systematic Review
Neurology,
Scott S Zamvil, and 9 more from outside UCSF
Related to: Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence
What is diagnosis in the age of artificial intelligence
Diagnosis,
Christine Cassel [last], and 1 more from outside UCSF
Altmetric score: 1Related to: Clinical Research, Networking and Information Technology R&D (NITRD), Bioengineering, Machine Learning and Artificial Intelligence
ORION: An agentic reasoning construct for the analysis of complex human immune profiling
bioRxiv,
Aaron Jaech, Aaron Bodansky, Joseph L. DeRisi [last], and 4 more from outside UCSF
Altmetric score: 2Related to: Cancer, Networking and Information Technology R&D (NITRD), Biotechnology, Machine Learning and Artificial Intelligence, Human Genome, Genetics, Data Science, Cancer Genomics, Autoimmune Disease
ORION: An agentic reasoning construct for the analysis of complex human immune profiling
bioRxiv,
Aaron Jaech, Aaron Bodansky, Joseph DeRisi [last], and 4 more from outside UCSF
Related to: Autoimmune Disease, Genetics, Machine Learning and Artificial Intelligence, Biotechnology, Human Genome, Data Science, Networking and Information Technology R&D (NITRD)
Chatbot Responses to Frequently Asked Questions About Cannabis and Its Use for Cancer Symptoms
Journal of Pain and Symptom Management,
Donald I Abrams, and 9 more from outside UCSF
Altmetric score: 2Related to: Cancer, Cannabinoid Research
Using Large Language Models to Determine Reasons for Missed Colon Cancer Screening Follow-Up
The Joint Commission Journal on Quality and Patient Safety,
Christopher Y.K. Williams, Urmimala Sarkar, Julia Adler-Milstein, Lisa Rotenstein
Related to: Digestive Diseases, Health Services, Aging, Colo-Rectal Cancer, Cancer, Clinical Research, Prevention
irAE-GPT: leveraging large language models to identify immune-related adverse events in electronic health records and clinical trial datasets
EBioMedicine,
Michelle Wang, Sam Brondfield, Francis Wright, Kimberly de Dios, Zoe Quandt [last], and 15 more from outside UCSF
Related to: Cancer, Immunotherapy, Patient Safety, Clinical Research
Investigating the use of generative AI policies among ASPPH member schools and programs of public health
Frontiers in Public Health,
Melissa Tracy, and 30 more from outside UCSF
Altmetric score: 1Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD)
irAE-GPT: leveraging large language models to identify immune-related adverse events in electronic health records and clinical trial datasets
EBioMedicine,
Michelle Wang, Sam Brondfield, Francis Wright, Kimberly de Dios, Zoe Quandt [last], and 15 more from outside UCSF
Related to: Patient Safety, Clinical Research, Immunotherapy, Cancer
Identification of primary sclerosing cholangitis: ICD-10 code validation and comparison with a large language model approach
Research Square,
Melinda Wang [first], Mai Dao, Cynthia Fenton, Michelle Y. Li, Jessica B. Rubin, Jin Ge, Jennifer C. Lai, Michael Li [last], and 1 more from outside UCSF
Related to: Digestive Diseases, Machine Learning and Artificial Intelligence, Digestive Diseases - (Gallbladder), Rare Diseases
Identification of primary sclerosing cholangitis: ICD-10 code validation and comparison with a large language model approach
Research Square,
Melinda Wang [first], Mai Dao, Cynthia Fenton, Michelle Y Li, Jessica B Rubin, Jin Ge, Jennifer C Lai, Michael Li [last], and 1 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence, Digestive Diseases - (Gallbladder), Rare Diseases, Digestive Diseases
Assessment of large language model chatbots for hemodialysis meal planning: a descriptive study
BMC Nephrology,
Kevin Shi [first], Delphine S. Tuot [last], and 2 more from outside UCSF
Altmetric score: 1Related to: Bioengineering, Nutrition, Clinical Research, Kidney Disease, Assistive Technology
Computational Identification of Salient Cancer Care Topics and Themes in Oncology Social
JNCI Cancer Spectrum,
Ryzen Benson, Swetha Rajkumar, Clodagh Kenny, Michelle Zhao, Ji-Hyun Chang, Theodore Scheel, Lauren Boreta, Julian C Hong
Related to: Social Determinants of Health, Cancer
Computational Identification of Salient Cancer Care Topics and Themes in Oncology Social
JNCI Cancer Spectrum,
Ryzen Benson, Swetha Rajkumar, Clodagh Kenny, Michelle Zhao, Ji-Hyun Chang, Theodore Scheel, Lauren Boreta, Julian C Hong
Related to: Social Determinants of Health, Cancer
Assessment of large language model chatbots for hemodialysis meal planning: a descriptive study
BMC Nephrology,
Kevin Shi [first], Delphine S. Tuot [last], and 2 more from outside UCSF
Related to: Bioengineering, Kidney Disease, Nutrition, Clinical Research, Assistive Technology
Artificial Intelligence in the Internal Medicine Clerkship: Results of a National Survey
Journal of General Internal Medicine,
Cindy J. Lai, Prashant Patel, and 8 more from outside UCSF
Related to: Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence
Navigating the artificial intelligence landscape in trauma, critical care and emergency general surgery: insights from the American Association for the Surgery of Trauma (AAST) 2025 Annual Meeting Panel Discussion
Trauma Surgery & Acute Care Open,
Joseph Cuschieri, and 5 more from outside UCSF
Related to: Data Science, Health Disparities, Patient Safety, Health Disparities and Racial or Ethnic Minority Health Research, Minority Health, Networking and Information Technology R&D (NITRD), Emergency Care, Physical Injury - Accidents and Adverse Effects, Bioengineering, Machine Learning and Artificial Intelligence