UCSF AI Publications
Pre‐Imaging Clinical Factors Associated With Cardiac MR Image Quality Using Large Language Model‐Enabled Data Extraction
Journal of Magnetic Resonance Imaging,
Hong Yu, Masha Bondarenko, Ali Nowroozi, Yoo Jin Lee, Adrian Serapio, Punita Kaveti, Jae Ho Sohn
Cited 1 timesRelated to: Bioengineering, Clinical Research, Biomedical Imaging, Heart Disease, Patient Safety, Cardiovascular
What is diagnosis in the age of artificial intelligence
Diagnosis,
Christine Cassel [last], and 1 more from outside UCSF
Related to: Clinical Research, Networking and Information Technology R&D (NITRD), Bioengineering, Machine Learning and Artificial Intelligence
ORION: An agentic reasoning construct for the analysis of complex human immune profiling
bioRxiv,
Aaron Jaech, Aaron Bodansky, Joseph L. DeRisi [last], and 4 more from outside UCSF
Related to: Data Science, Biotechnology, Networking and Information Technology R&D (NITRD), Cancer, Autoimmune Disease, Genetics, Human Genome, Cancer Genomics, Machine Learning and Artificial Intelligence
ORION: An agentic reasoning construct for the analysis of complex human immune profiling
bioRxiv,
Aaron Jaech, Aaron Bodansky, Joseph DeRisi [last], and 4 more from outside UCSF
Related to: Autoimmune Disease, Genetics, Machine Learning and Artificial Intelligence, Biotechnology, Human Genome, Data Science, Networking and Information Technology R&D (NITRD)
Chatbot Responses to Frequently Asked Questions about Cannabis and Its Use for Cancer Symptoms
Journal of Pain and Symptom Management,
Donald I Abrams, and 9 more from outside UCSF
Altmetric score: 2Related to: Cancer, Cannabinoid Research
Investigating the use of generative AI policies among ASPPH member schools and programs of public health
Frontiers in Public Health,
Melissa Tracy, and 30 more from outside UCSF
Altmetric score: 1Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD)
irAE-GPT: leveraging large language models to identify immune-related adverse events in electronic health records and clinical trial datasets
EBioMedicine,
Michelle Wang, Sam Brondfield, Francis Wright, Kimberly de Dios, Zoe Quandt [last], and 15 more from outside UCSF
Related to: Patient Safety, Clinical Research, Immunotherapy, Cancer
Identification of primary sclerosing cholangitis: ICD-10 code validation and comparison with a large language model approach
Research Square,
Melinda Wang [first], Mai Dao, Cynthia Fenton, Michelle Y. Li, Jessica B. Rubin, Jin Ge, Jennifer C. Lai, Michael Li [last], and 1 more from outside UCSF
Related to: Digestive Diseases, Machine Learning and Artificial Intelligence, Digestive Diseases - (Gallbladder), Rare Diseases
Computational Identification of Salient Cancer Care Topics and Themes in Oncology Social
JNCI Cancer Spectrum,
Ryzen Benson, Swetha Rajkumar, Clodagh Kenny, Michelle Zhao, Ji-Hyun Chang, Theodore Scheel, Lauren Boreta, Julian C Hong
Related to: Social Determinants of Health, Cancer
Assessment of large language model chatbots for hemodialysis meal planning: a descriptive study
BMC Nephrology,
Kevin Shi [first], Delphine S. Tuot [last], and 2 more from outside UCSF
Related to: Bioengineering, Kidney Disease, Nutrition, Clinical Research, Assistive Technology
Artificial Intelligence in the Internal Medicine Clerkship: Results of a National Survey
Journal of General Internal Medicine,
Cindy J. Lai, Prashant Patel, and 8 more from outside UCSF
Related to: Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence
Navigating the artificial intelligence landscape in trauma, critical care and emergency general surgery: insights from the American Association for the Surgery of Trauma (AAST) 2025 Annual Meeting Panel Discussion
Trauma Surgery & Acute Care Open,
Joseph Cuschieri, and 5 more from outside UCSF
Related to: Data Science, Health Disparities, Patient Safety, Health Disparities and Racial or Ethnic Minority Health Research, Minority Health, Networking and Information Technology R&D (NITRD), Emergency Care, Physical Injury - Accidents and Adverse Effects, Bioengineering, Machine Learning and Artificial Intelligence
BioReason-Pro: Advancing Protein Function Prediction with Multimodal Biological Reasoning
bioRxiv,
Hani Goodarzi, and 33 more from outside UCSF
Cited 1 timesRelated to: Bioengineering, Networking and Information Technology R&D (NITRD)
Innovating global regulatory frameworks for generative AI in medical devices is an urgent priority
npj Digital Medicine,
Liang Zhao, and 15 more from outside UCSF
Altmetric score: 17Related to: Machine Learning and Artificial Intelligence
Priorities for advancing artificial intelligence in inflammatory bowel disease: a technology update
Gastrointestinal Endoscopy,
Uma Mahadevan [last], and 4 more from outside UCSF
Altmetric score: 1Related to: Autoimmune Disease, Digestive Diseases, Networking and Information Technology R&D (NITRD), Inflammatory Bowel Disease, Machine Learning and Artificial Intelligence, Clinical Research, Crohn's Disease, Data Science, Bioengineering
Strengths and Potential Pitfalls of the Use of Artificial Intelligence in Psychiatric Education and Practice
Academic Psychiatry,
Andreea L. Seritan, and 6 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD)
Patient perspectives about deployment of artificial intelligence decision support tools in a safety-net healthcare system
JAMIA Open,
Nicholas Phelps [first], Patrick Vossler, Avni Kothari, Katherine Steineman, Seth Goldman, Arturo Gasga, Hemal Kanzaria, Julia Adler-Milstein, Jean Feng, Lucas S Zier [last], and 2 more from outside UCSF
Altmetric score: 1Related to: Health Services, Health Disparities, Clinical Research, Networking and Information Technology R&D (NITRD), Health Disparities and Racial or Ethnic Minority Health Research, Machine Learning and Artificial Intelligence, Patient Safety
Patient perspectives about deployment of artificial intelligence decision support tools in a safety-net healthcare system
JAMIA Open,
Nicholas Phelps [first], Patrick Vossler, Avni Kothari, Katherine Steineman, Seth Goldman, Arturo Gasga, Hemal Kanzaria, Julia Adler-Milstein, Jean Feng, Lucas S Zier [last], and 2 more from outside UCSF
Altmetric score: 1Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Health Disparities and Racial or Ethnic Minority Health Research, Health Services, Health Disparities, Clinical Research, Patient Safety
Advanced Prompting Techniques Informed by Clinical Expertise Improve the Accuracy of LLM Data Extraction but Increase Non-Determinism
Journal of Imaging Informatics in Medicine,
Yifei Wang [first], Carly Stewart, Matthew Malekhedayat, Jason Luong, Rebecca Smith-Bindman, John Mongan [last], and 1 more from outside UCSF
Related to: Clinical Research
Leveraging large language models to populate structured clinical case report forms from unstructured medical notes in radiation oncology
Clinical and Translational Radiation Oncology,
Augusto Garcia-Agundez, and 7 more from outside UCSF
Cited 1 timesRelated to: Radiation Oncology, Clinical Research, Cancer
Integrating Artificial Intelligence in Periodontal Diagnosis: A Comparative Evaluation of ChatGPT‐4 and Dental Educators
Journal of Dental Education,
Eva Bender, and 10 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence, Clinical Research, Bioengineering, Dental/Oral and Craniofacial Disease, Infectious Diseases
Integrating Artificial Intelligence in Periodontal Diagnosis: A Comparative Evaluation of ChatGPT‐4 and Dental Educators
Journal of Dental Education,
Eva Bender, and 10 more from outside UCSF
Related to: Infectious Diseases, Dental/Oral and Craniofacial Disease, Machine Learning and Artificial Intelligence, Bioengineering, Clinical Research
Will AI keep you out of trouble? An expert panel review of LLMs for hazardous regional anesthesia consults
Journal of Clinical Anesthesia,
Andrew Gray, and 7 more from outside UCSF
Related to: Patient Safety
Bidirectional data harmonization across the multiple chronic disease disparities research consortium: A pipeline description of opportunities and challenges
Journal of Biomedical Informatics,
Hyelee Kim, Shuang Liang, Kathy Lanier, Sarit Helman, Niloufar Ameli, Sepideh Banava, Nancy Fan Cheng, Jason Boyce, Yulin Hswen, Catherine E Oldenburg, Kim F Rhoads, Edwin D Charlebois, Stuart A Gansky, William Brown Iii
Related to: Social Determinants of Health, Health Disparities and Racial or Ethnic Minority Health Research, Behavioral and Social Science, Precision Medicine
Artificial Intelligence in Surgical Feedback: A Systematic Scoping Review
Journal of Surgical Education,
Patrick Barba, Stephanie Younan, Kimberley Luu
Related to: Health Disparities, Bioengineering, Machine Learning and Artificial Intelligence, Health Disparities and Racial or Ethnic Minority Health Research, Networking and Information Technology R&D (NITRD)
Large Language Model Predicts Surgeon Recommendations for Imaging and Surgery for Patients Presenting for Knee and Shoulder Complaints With 70% and 81% Accuracy Using Previsit Questionnaire Responses
Arthroscopy The Journal of Arthroscopic and Related Surgery,
Ryan T. Halvorson, Timothy Keeley, Kian Niknam, Travis Zack, Sharmila Majumdar, Brian T. Feeley, Alan L. Zhang, Drew A. Lansdown
Cited 1 timesRelated to: Pain Research, Bioengineering, Arthritis, Clinical Research, Physical Injury - Accidents and Adverse Effects, Biomedical Imaging, Patient Safety
Reporting checklist for foundation and large language models in medical research (REFINE): an international consensus guideline
Diagnostic and Interventional Radiology,
Ali S Tejani, and 56 more from outside UCSF
Altmetric score: 4
Cited 3 timesRelated to: Machine Learning and Artificial Intelligence, Cancer, Networking and Information Technology R&D (NITRD), Biomedical Imaging
Large language models in trauma anesthesia education
Current Opinion in Anaesthesiology,
Elodie Lang, Tyler J. Law [last], and 1 more from outside UCSF
Cited 1 timesReflecting on 25 years of SPIKES: Bad News Communication in Our Modern Era
The Oncologist,
Mazie Tsang [last], and 1 more from outside UCSF
CDR-Agent: Intelligent Selection and Execution of Clinical Decision Rules Using Large Language Model Agents.
AMIA Annual Symposium Proceedings,
Aaron E Kornblith, Margaret J Lin-Martore, Jasmanpreet C Kaur, Vasuda M Dokiparthi, and 5 more from outside UCSF
Cited 2 timesRelated to: Emergency Care
Knowledge augmented causal discovery through large language models and knowledge graphs: application in chronic low back pain
medRxiv,
Conor O’Neill, Jeffrey C Lotz, Abel Torres-Espin [last], and 3 more from outside UCSF
Altmetric score: 1Related to: Back Pain, Pain Research, Bioengineering, Chronic Pain
Self-reported comprehension of large language model-generated summaries of lung cancer screening reports: a vignette survey
Radiology Advances,
Juan A Serna [first], Yannan Yu, Koharu Sakiyama, Alison Rustagi, Jae Ho Sohn [last], and 2 more from outside UCSF
Related to: Cancer, Lung Cancer, Clinical Research, Lung, Basic Behavioral and Social Science, Women's Health, Biomedical Imaging, Behavioral and Social Science, Clinical Trials and Supportive Activities
Benchmarking large language models for predictive modeling in biomedical research with a focus on reproductive health
Cell Reports Medicine,
Reuben Sarwal [first], Claire A. Dubin, Sanchita Bhattacharya, Atul Butte, Tomiko T. Oskotsky, Marina Sirota [last], and 6 more from outside UCSF
Altmetric score: 129
Cited 2 timesRelated to: Prevention, Contraception/Reproduction, Pediatric Research Initiative, Infant Mortality, Perinatal Period - Conditions Originating in Perinatal Period
Self-reported comprehension of large language model-generated summaries of lung cancer screening reports: a vignette survey
Radiology Advances,
Juan A Serna [first], Yannan Yu, Koharu Sakiyama, Alison Rustagi, Jae Ho Sohn [last], and 2 more from outside UCSF
Related to: Basic Behavioral and Social Science, Lung, Behavioral and Social Science, Women's Health, Clinical Research, Biomedical Imaging, Lung Cancer, Cancer, Clinical Trials and Supportive Activities
Large language models provide unsafe answers to patient-posed medical questions
npj Digital Medicine,
Jessica Evert, and 16 more from outside UCSF
Altmetric score: 23
Cited 4 timesartificial intelligence–enabled precision medicine for inflammatory skin diseases
Journal of Investigative Dermatology,
Alice S. Tang [first], Maria L. Wei, Anna Haemel, Marina Sirota, Ernest Y. Lee [last], and 1 more from outside UCSF
Cited 1 timesRelated to: Data Science, Bioengineering, Clinical Research, Eczema / Atopic Dermatitis, Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Autoimmune Disease, Psoriasis, Precision Medicine
artificial intelligence–enabled precision medicine for inflammatory skin diseases
Journal of Investigative Dermatology,
Alice S. Tang [first], Maria L. Wei, Anna Haemel, Marina Sirota, Ernest Y. Lee [last], and 1 more from outside UCSF
Cited 1 timesRelated to: Psoriasis, Clinical Research, Networking and Information Technology R&D (NITRD), Eczema / Atopic Dermatitis, Bioengineering, Machine Learning and Artificial Intelligence, Data Science, Autoimmune Disease, Precision Medicine
Community health workers and social media: benefits, drawbacks, and training needs
mHealth,
Mallory O. Johnson, Parya Saberi, and 6 more from outside UCSF
Cited 1 timesRelated to: Health Disparities, Prevention, Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Health Services, Social Determinants of Health, Health Disparities and Racial or Ethnic Minority Health Research, Behavioral and Social Science, Clinical Research
Community health workers and social media: benefits, drawbacks, and training needs
mHealth,
Mallory O. Johnson, Parya Saberi, and 6 more from outside UCSF
Altmetric score:Related to: Health Services, Health Disparities and Racial or Ethnic Minority Health Research, Social Determinants of Health, Prevention, Machine Learning and Artificial Intelligence, Behavioral and Social Science, Networking and Information Technology R&D (NITRD), Clinical Research, Health Disparities
MetaMind: A multi-agent transformer-driven framework for automated network meta-analyses
PLOS ONE,
Vivek Rudrapatna, and 10 more from outside UCSF
Altmetric score: 1Related to: Digestive Diseases, Crohn's Disease, Autoimmune Disease, Inflammatory Bowel Disease
Incidence, contributing factors, and predictors of diagnostic errors in medical inpatients: A retrospective cohort study
Journal of Hospital Medicine,
Gurpreet Dhaliwal, and 9 more from outside UCSF
Related to: Cancer, Patient Safety, Clinical Research, Women's Health
Medical school admissions competencies: what problems need to be solved?
Academic Medicine,
Karen E Hauer, Erick Hung
Altmetric score: 1Scaling medical device regulatory science using large language models
npj Digital Medicine,
Patrick Vossler, Jean Feng [last], and 5 more from outside UCSF
Altmetric score: 8
Cited 1 timesRelated to: Bioengineering, Networking and Information Technology R&D (NITRD), Data Science, Patient Safety, Machine Learning and Artificial Intelligence, Assistive Technology
Exploring the Past and Current Landscape of Biomarker-Driven Clinical Trials Through Large Language Models
JCO Clinical Cancer Informatics,
Margaret Guo [first], Brenda Miao, Atul Butte, Travis Zack [last], and 2 more from outside UCSF
Related to: Human Genome, Patient Safety, Clinical Trials and Supportive Activities, Genetics, Cancer, Clinical Research, Cancer Genomics, Precision Medicine
Comparative evaluation of large language models for hip fracture-related patient questions: DeepSeek-V3-FW, Gemini 2.0 Flash, and ChatGPT-4.5
Digital Health,
Theodore Miclau, and 12 more from outside UCSF
Related to: Health Services, Patient Safety, Clinical Research
MedEvalarena: A Self-Generated, Peer-Judged Benchmark for Medical Reasoning
medRxiv,
Kie Shidara, Esmé Wheeler, Danilo Bernardo [last], and 4 more from outside UCSF
Altmetric score: 1Text-Driven Tumor Synthesis
IEEE Transactions on Medical Imaging,
Kang Wang, Yang Yang, and 12 more from outside UCSF
Altmetric score:Related to: Cancer, Biomedical Imaging
Interdisciplinary expertise to advance human-centered explainable AI
Social Science & Medicine,
Courtney Lyles [last], and 11 more from outside UCSF
Related to: Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence, Basic Behavioral and Social Science, Behavioral and Social Science
Care Team Model and Diagnostic Error Risk in Medical Patients Who Transferred to the ICU or Died
Journal of General Internal Medicine,
Colin Hubbard, Andrew Auerbach [last], and 4 more from outside UCSF
Altmetric score: 18Related to: Patient Safety
Using an Open–Source Large Language Model to Predict Current Procedural Terminology Codes from Interventional Radiology Post-Procedural Notes
Journal of Vascular and Interventional Radiology,
Xiao Wu, Jae Ho Sohn [last], and 1 more from outside UCSF
Altmetric score: 7