UCSF AI Publications
The chief pharmacy officer’s role in integrating artificial intelligence across the enterprise
American Journal of Health-System Pharmacy,
Kendall Gross, and 4 more from outside UCSF
Altmetric score: 2Extracting adverse event nature, severity, timelines and resulting interventions from clinical notes of patients receiving CAR-T therapy using large language models
medRxiv,
Jordan Guillot, Brenda Miao, Arvind Suresh, Madhumita Sushil, Christopher Yk Williams, Rohit Vashisht, Tomiko T. Oskotsky, Marina Sirota, Atul J. Butte
Altmetric score: 2Related to: Patient Safety, Biotechnology, Gene Therapy, Genetics
Retrieval-Augmented Generation in Oncology: Promises, Pitfalls, and Early Applications
AI in Precision Oncology,
Julian Hong [last], and 9 more from outside UCSF
Altmetric score: 20Related to: Human Genome, Cancer, Genetics, Networking and Information Technology R&D (NITRD), Precision Medicine, Cancer Genomics, Patient Safety
Deriving the OTA/AO fracture classification from routinely collected radiology reports using a large language model
OTA International The Open Access Journal of Orthopaedic Trauma,
Stephanie Hu [first], Timothy Keeley, Ryan Halvorson, Meir T. Marmor [last], and 7 more from outside UCSF
Related to: Biomedical Imaging
Performance of a large language model on the reasoning tasks of a physician
Science,
Robert Gallo, and 24 more from outside UCSF
Altmetric score: 1368
Cited 34 timesRelated to: Clinical Research, Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence
Large language models for automated and audience-tailored labeling of latent classes
JAMIA Open,
Fatemeh Gholi Zadeh Kharrat [first], Wolf Mehling, C Anthony Hunt, Jeffrey Lotz, Thomas A Peterson, and 60 more from outside UCSF
Related to: Clinical Research, Machine Learning and Artificial Intelligence, Neurosciences, Social Determinants of Health, Behavioral and Social Science, Chronic Pain, Back Pain, Mental Health, Pain Research, Basic Behavioral and Social Science
Large language models for automated and audience-tailored labeling of latent classes
JAMIA Open,
Fatemeh Gholi Zadeh Kharrat [first], Wolf Mehling, C Anthony Hunt, Jeffrey Lotz, Thomas A Peterson, Jeannie Bailey, Noah Bonnheim, Roland Krug, Conor O’Neill, and 56 more from outside UCSF
Related to: Chronic Pain, Social Determinants of Health, Behavioral and Social Science, Back Pain, Mental Health, Basic Behavioral and Social Science, Pain Research, Neurosciences, Clinical Research, Machine Learning and Artificial Intelligence
Problem representation in the age of artificial intelligence: the state of a dying art?
Diagnosis,
Gurpreet Dhaliwal, and 4 more from outside UCSF
Altmetric score: 2Related to: Machine Learning and Artificial Intelligence
Are LLM-generated plain language summaries truly understandable? A large-scale crowdsourced evaluation
Journal of Biomedical Informatics,
Jae Ho Sohn, and 3 more from outside UCSF
Cited 1 timesRelated to: Behavioral and Social Science, Machine Learning and Artificial Intelligence, Clinical Research, Basic Behavioral and Social Science
Use of the Dynamic Systems Development Method to Inform Technology-Assisted Motivational Interviewing (TAMI) for Tobacco Cessation: Qualitative Study
JMIR Formative Research,
Brian Borsari [first], Joannalyn Delacruz, John Layton, Karla D Llanes, Isaac A Mirzadegan, Jing Cheng, Anita S Hargrave-Bouagnon, Meredith C Meacham, Jason Satterfield [last], and 2 more from outside UCSF
Altmetric score: 1Related to: Behavioral and Social Science, Prevention, Cancer, Bioengineering, Dissemination and Implementation Research, Machine Learning and Artificial Intelligence, Substance Misuse, Networking and Information Technology R&D (NITRD), Tobacco Smoke and Health, Drug Abuse (NIDA only), Tobacco, Clinical Research
Pre‐Imaging Clinical Factors Associated With Cardiac MR Image Quality Using Large Language Model‐Enabled Data Extraction
Journal of Magnetic Resonance Imaging,
Hong Yu, Masha Bondarenko, Ali Nowroozi, Yoo Jin Lee, Adrian Serapio, Punita Kaveti, Jae Ho Sohn
Altmetric score: 4
Cited 1 timesRelated to: Bioengineering, Clinical Research, Patient Safety, Biomedical Imaging, Cardiovascular, Heart Disease
Pre‐Imaging Clinical Factors Associated With Cardiac MR Image Quality Using Large Language Model‐Enabled Data Extraction
Journal of Magnetic Resonance Imaging,
Hong Yu, Masha Bondarenko, Ali Nowroozi, Yoo Jin Lee, Adrian Serapio, Punita Kaveti, Jae Ho Sohn
Altmetric score: 4
Cited 1 timesRelated to: Cardiovascular, Biomedical Imaging, Bioengineering, Clinical Research, Patient Safety, Heart Disease
Updating Neurology® Journals' Policies on AI Use, Reporting of Genetic Studies, and Protocols for Systematic Review
Neurology,
Scott S Zamvil, and 9 more from outside UCSF
Related to: Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence
What is diagnosis in the age of artificial intelligence
Diagnosis,
Christine Cassel [last], and 1 more from outside UCSF
Altmetric score: 1Related to: Clinical Research, Networking and Information Technology R&D (NITRD), Bioengineering, Machine Learning and Artificial Intelligence
ORION: An agentic reasoning construct for the analysis of complex human immune profiling
bioRxiv,
Aaron Jaech, Aaron Bodansky, Joseph L. DeRisi [last], and 4 more from outside UCSF
Altmetric score: 2Related to: Cancer Genomics, Autoimmune Disease, Human Genome, Biotechnology, Genetics, Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD), Data Science, Cancer
ORION: An agentic reasoning construct for the analysis of complex human immune profiling
bioRxiv,
Aaron Jaech, Aaron Bodansky, Joseph DeRisi [last], and 4 more from outside UCSF
Related to: Autoimmune Disease, Genetics, Machine Learning and Artificial Intelligence, Biotechnology, Human Genome, Data Science, Networking and Information Technology R&D (NITRD)
Chatbot Responses to Frequently Asked Questions About Cannabis and Its Use for Cancer Symptoms
Journal of Pain and Symptom Management,
Donald I Abrams, and 9 more from outside UCSF
Altmetric score: 2Related to: Cannabinoid Research, Cancer
Using Large Language Models to Determine Reasons for Missed Colon Cancer Screening Follow-Up
The Joint Commission Journal on Quality and Patient Safety,
Christopher Y.K. Williams, Urmimala Sarkar, Julia Adler-Milstein, Lisa Rotenstein
Related to: Digestive Diseases, Health Services, Aging, Colo-Rectal Cancer, Cancer, Clinical Research, Prevention
irAE-GPT: leveraging large language models to identify immune-related adverse events in electronic health records and clinical trial datasets
EBioMedicine,
Michelle Wang, Sam Brondfield, Francis Wright, Kimberly de Dios, Zoe Quandt [last], and 15 more from outside UCSF
Related to: Patient Safety, Clinical Research, Immunotherapy, Cancer
irAE-GPT: leveraging large language models to identify immune-related adverse events in electronic health records and clinical trial datasets
EBioMedicine,
Michelle Wang, Sam Brondfield, Francis Wright, Kimberly de Dios, Zoe Quandt [last], and 15 more from outside UCSF
Cited 3 timesRelated to: Clinical Research, Cancer, Patient Safety, Immunotherapy
Investigating the use of generative AI policies among ASPPH member schools and programs of public health
Frontiers in Public Health,
Melissa Tracy, and 30 more from outside UCSF
Altmetric score: 1Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD)
Identification of primary sclerosing cholangitis: ICD-10 code validation and comparison with a large language model approach
Research Square,
Melinda Wang [first], Mai Dao, Cynthia Fenton, Michelle Y. Li, Jessica B. Rubin, Jin Ge, Jennifer C. Lai, Michael Li [last], and 1 more from outside UCSF
Related to: Digestive Diseases, Machine Learning and Artificial Intelligence, Digestive Diseases - (Gallbladder), Rare Diseases
Identification of primary sclerosing cholangitis: ICD-10 code validation and comparison with a large language model approach
Research Square,
Melinda Wang [first], Mai Dao, Cynthia Fenton, Michelle Y Li, Jessica B Rubin, Jin Ge, Jennifer C Lai, Michael Li [last], and 1 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence, Digestive Diseases - (Gallbladder), Rare Diseases, Digestive Diseases
Assessment of large language model chatbots for hemodialysis meal planning: a descriptive study
BMC Nephrology,
Kevin Shi [first], Delphine S. Tuot [last], and 2 more from outside UCSF
Altmetric score: 1Related to: Bioengineering, Nutrition, Clinical Research, Kidney Disease, Assistive Technology
Computational Identification of Salient Cancer Care Topics and Themes in Oncology Social
JNCI Cancer Spectrum,
Ryzen Benson, Swetha Rajkumar, Clodagh Kenny, Michelle Zhao, Ji-Hyun Chang, Theodore Scheel, Lauren Boreta, Julian C Hong
Related to: Social Determinants of Health, Cancer
Computational Identification of Salient Cancer Care Topics and Themes in Oncology Social
JNCI Cancer Spectrum,
Ryzen Benson, Swetha Rajkumar, Clodagh Kenny, Michelle Zhao, Ji-Hyun Chang, Theodore Scheel, Lauren Boreta, Julian C Hong
Related to: Social Determinants of Health, Cancer
Assessment of large language model chatbots for hemodialysis meal planning: a descriptive study
BMC Nephrology,
Kevin Shi [first], Delphine S. Tuot [last], and 2 more from outside UCSF
Related to: Bioengineering, Kidney Disease, Nutrition, Clinical Research, Assistive Technology
Artificial Intelligence in the Internal Medicine Clerkship: Results of a National Survey
Journal of General Internal Medicine,
Cindy J. Lai, Prashant Patel, and 8 more from outside UCSF
Related to: Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence
Navigating the artificial intelligence landscape in trauma, critical care and emergency general surgery: insights from the American Association for the Surgery of Trauma (AAST) 2025 Annual Meeting Panel Discussion
Trauma Surgery & Acute Care Open,
Joseph Cuschieri, and 5 more from outside UCSF
Related to: Data Science, Health Disparities, Patient Safety, Health Disparities and Racial or Ethnic Minority Health Research, Minority Health, Networking and Information Technology R&D (NITRD), Emergency Care, Physical Injury - Accidents and Adverse Effects, Bioengineering, Machine Learning and Artificial Intelligence
Navigating the artificial intelligence landscape in trauma, critical care and emergency general surgery: insights from the American Association for the Surgery of Trauma (AAST) 2025 Annual Meeting Panel Discussion
Trauma Surgery & Acute Care Open,
Joseph Cuschieri, and 5 more from outside UCSF
Related to: Physical Injury - Accidents and Adverse Effects, Minority Health, Machine Learning and Artificial Intelligence, Health Disparities, Data Science, Networking and Information Technology R&D (NITRD), Health Disparities and Racial or Ethnic Minority Health Research, Bioengineering, Emergency Care, Patient Safety
BioReason-Pro: Advancing Protein Function Prediction with Multimodal Biological Reasoning
bioRxiv,
Hani Goodarzi, and 33 more from outside UCSF
Altmetric score: 22
Cited 2 timesRelated to: Networking and Information Technology R&D (NITRD), Bioengineering
BioReason-Pro: Advancing Protein Function Prediction with Multimodal Biological Reasoning
bioRxiv,
Hani Goodarzi, and 33 more from outside UCSF
Cited 1 timesRelated to: Bioengineering, Networking and Information Technology R&D (NITRD)
Innovating global regulatory frameworks for generative AI in medical devices is an urgent priority
npj Digital Medicine,
Liang Zhao, and 15 more from outside UCSF
Altmetric score: 17Related to: Machine Learning and Artificial Intelligence
Priorities for advancing artificial intelligence in inflammatory bowel disease: a technology update
Gastrointestinal Endoscopy,
Uma Mahadevan [last], and 4 more from outside UCSF
Altmetric score: 1Related to: Autoimmune Disease, Networking and Information Technology R&D (NITRD), Digestive Diseases, Inflammatory Bowel Disease, Bioengineering, Data Science, Clinical Research, Machine Learning and Artificial Intelligence, Crohn's Disease
Innovating global regulatory frameworks for generative AI in medical devices is an urgent priority
npj Digital Medicine,
Liang Zhao, and 15 more from outside UCSF
Altmetric score: 17Related to: Machine Learning and Artificial Intelligence
Patient perspectives about deployment of artificial intelligence decision support tools in a safety-net healthcare system
JAMIA Open,
Nicholas Phelps [first], Patrick Vossler, Avni Kothari, Katherine Steineman, Seth Goldman, Arturo Gasga, Hemal Kanzaria, Julia Adler-Milstein, Jean Feng, Lucas S Zier [last], and 2 more from outside UCSF
Altmetric score: 1Related to: Health Services, Health Disparities, Clinical Research, Networking and Information Technology R&D (NITRD), Health Disparities and Racial or Ethnic Minority Health Research, Machine Learning and Artificial Intelligence, Patient Safety
Patient perspectives about deployment of artificial intelligence decision support tools in a safety-net healthcare system
JAMIA Open,
Nicholas Phelps [first], Patrick Vossler, Avni Kothari, Katherine Steineman, Seth Goldman, Arturo Gasga, Hemal Kanzaria, Julia Adler-Milstein, Jean Feng, Lucas S Zier [last], and 2 more from outside UCSF
Altmetric score: 1
Cited 1 timesRelated to: Health Disparities, Patient Safety, Clinical Research, Machine Learning and Artificial Intelligence, Health Disparities and Racial or Ethnic Minority Health Research, Networking and Information Technology R&D (NITRD), Health Services
Strengths and Potential Pitfalls of the Use of Artificial Intelligence in Psychiatric Education and Practice
Academic Psychiatry,
Andreea L. Seritan, and 6 more from outside UCSF
Cited 1 timesRelated to: Networking and Information Technology R&D (NITRD), Machine Learning and Artificial Intelligence
Strengths and Potential Pitfalls of the Use of Artificial Intelligence in Psychiatric Education and Practice
Academic Psychiatry,
Andreea L. Seritan, and 6 more from outside UCSF
Related to: Machine Learning and Artificial Intelligence, Networking and Information Technology R&D (NITRD)
Advanced Prompting Techniques Informed by Clinical Expertise Improve the Accuracy of LLM Data Extraction but Increase Non-Determinism
Journal of Imaging Informatics in Medicine,
Yifei Wang [first], Carly Stewart, Matthew Malekhedayat, Jason Luong, Rebecca Smith-Bindman, John Mongan [last], and 1 more from outside UCSF
Altmetric score: 1Related to: Clinical Research
Advanced Prompting Techniques Informed by Clinical Expertise Improve the Accuracy of LLM Data Extraction but Increase Non-Determinism
Journal of Imaging Informatics in Medicine,
Yifei Wang [first], Carly Stewart, Matthew Malekhedayat, Jason Luong, Rebecca Smith-Bindman, John Mongan [last], and 1 more from outside UCSF
Related to: Clinical Research
Leveraging large language models to populate structured clinical case report forms from unstructured medical notes in radiation oncology
Clinical and Translational Radiation Oncology,
Augusto Garcia-Agundez, and 7 more from outside UCSF
Cited 1 timesRelated to: Radiation Oncology, Clinical Research, Cancer
Leveraging large language models to populate structured clinical case report forms from unstructured medical notes in radiation oncology
Clinical and Translational Radiation Oncology,
Augusto Garcia-Agundez, and 7 more from outside UCSF
Cited 1 timesRelated to: Radiation Oncology, Clinical Research, Cancer
Integrating Artificial Intelligence in Periodontal Diagnosis: A Comparative Evaluation of ChatGPT‐4 and Dental Educators
Journal of Dental Education,
Eva Bender, and 10 more from outside UCSF
Related to: Dental/Oral and Craniofacial Disease, Infectious Diseases, Machine Learning and Artificial Intelligence, Bioengineering, Clinical Research
Implicit Gender, Racial, and Ethnic Biases in Large Language Models: An Audit Study of Automated Psychiatric Diagnoses
Mayo Clinic Proceedings Digital Health,
Sachin R. Pendse [first], and 3 more from outside UCSF
Related to: Mental Health, Machine Learning and Artificial Intelligence, Social Determinants of Health, Clinical Research, Behavioral and Social Science
Integrating Artificial Intelligence in Periodontal Diagnosis: A Comparative Evaluation of ChatGPT‐4 and Dental Educators
Journal of Dental Education,
Eva Bender, and 10 more from outside UCSF
Related to: Infectious Diseases, Dental/Oral and Craniofacial Disease, Machine Learning and Artificial Intelligence, Bioengineering, Clinical Research
Will AI keep you out of trouble? An expert panel review of LLMs for hazardous regional anesthesia consults
Journal of Clinical Anesthesia,
Andrew Gray, and 7 more from outside UCSF
Related to: Patient Safety
Artificial Intelligence in Surgical Feedback: A Systematic Scoping Review
Journal of Surgical Education,
Patrick Barba, Stephanie Younan, Kimberley Luu
Related to: Networking and Information Technology R&D (NITRD), Health Disparities and Racial or Ethnic Minority Health Research, Machine Learning and Artificial Intelligence, Bioengineering, Health Disparities
Large Language Model Predicts Surgeon Recommendations for Imaging and Surgery for Patients Presenting for Knee and Shoulder Complaints With 70% and 81% Accuracy Using Previsit Questionnaire Responses
Arthroscopy The Journal of Arthroscopic and Related Surgery,
Ryan T. Halvorson, Timothy Keeley, Kian Niknam, Travis Zack, Sharmila Majumdar, Brian T. Feeley, Alan L. Zhang, Drew A. Lansdown
Cited 1 timesRelated to: Pain Research, Bioengineering, Arthritis, Clinical Research, Physical Injury - Accidents and Adverse Effects, Biomedical Imaging, Patient Safety
Bidirectional data harmonization across the multiple chronic disease disparities research consortium: A pipeline description of opportunities and challenges
Journal of Biomedical Informatics,
Hyelee Kim [first], Shuang Liang, Sarit Helman, Niloufar Ameli, Sepideh Banava, Nancy Fan Cheng, Yulin Hswen, Catherine E. Oldenburg, Kim F. Rhoads, Edwin D. Charlebois, Stuart A. Gansky, William Brown [last], and 2 more from outside UCSF
Related to: Precision Medicine, Social Determinants of Health, Health Disparities and Racial or Ethnic Minority Health Research, Behavioral and Social Science